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ASM3623417v1

Organism name:
Streptococcus anginosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB4708
BioSample:
SAMN39507712
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2024/01/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_036234175.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAZAYA01
Assembly method:
SPAdes v. 3.15.4
Expected final version:
yes
Genome coverage:
176.873x
Sequencing technology:
Illumina NextSeq

IDs: 21162181 [UID] 53265958 [GenBank]

See Genome Information for Streptococcus anginosus

There are 347 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/23/2024 11:22:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,134
CDSs (total)::2,097
Genes (coding)::1,966
CDSs (with protein)::1,966
Genes (RNA)::37
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::131
CDSs (without protein)::131
Pseudo Genes (ambiguous residues)::0 of 131
Pseudo Genes (frameshifted)::69 of 131
Pseudo Genes (incomplete)::57 of 131
Pseudo Genes (internal stop)::53 of 131
Pseudo Genes (multiple problems)::41 of 131
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,086,197
Total ungapped length2,086,197
Number of contigs41
Contig N50123,754
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,086,197412,086,197123,75400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus anginosusStreptococcus anginosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020735765.1Streptococcus anginosus subsp. anginosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020735765.1Streptococcus anginosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.3872.5680.68
Best-match type95.3872.5680.68

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna