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ASM3131253v1

Organism name:
Methanolobus mangrovi (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: FTZ2
BioSample:
SAMN37170650
BioProject:
PRJNA1009938
Submitter:
Shenzhen University
Date:
2023/09/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_031312535.1 (latest)
RefSeq assembly accession:
GCF_031312535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
515x
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 18438831 [UID] 47168648 [GenBank] 47213938 [RefSeq]

See Genome Information for Methanolobus mangrovi

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/26/2023 10:22:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,574
CDSs (total)::2,502
Genes (coding)::2,488
CDSs (with protein)::2,488
Genes (RNA)::72
rRNAs::5, 4, 4 (5S, 16S, 23S)
complete rRNAs::5, 4, 4 (5S, 16S, 23S)
tRNAs::57
ncRNAs::2
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::3 of 14
Pseudo Genes (incomplete)::7 of 14
Pseudo Genes (internal stop)::9 of 14
Pseudo Genes (multiple problems)::4 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,623,311
Total ungapped length2,623,311
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_031312545.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP133594.1=NZ_CP133594.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,623,311

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanolobus mangroviMethanolobus mangrovi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002243045.1Methanolobus psychrotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.3255.0845.66

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected