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ASM3038559v1

Organism name:
Mediterraneibacter glycyrrhizinilyticus (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 39_SSukc10
BioSample:
SAMN34359412
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030385595.1 (latest)
RefSeq assembly accession:
GCF_030385595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUEIO01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
137x
Sequencing technology:
Illumina NextSeq

IDs: 17293191 [UID] 44323368 [GenBank] 45311868 [RefSeq]

See Genome Information for Mediterraneibacter glycyrrhizinilyticus

There are 13 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/27/2023 15:37:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,010
CDSs (total)::2,950
Genes (coding)::2,879
CDSs (with protein)::2,879
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::53
ncRNAs::4
Pseudo Genes (total)::71
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::15 of 71
Pseudo Genes (incomplete)::56 of 71
Pseudo Genes (internal stop)::7 of 71
Pseudo Genes (multiple problems)::7 of 71
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,140,430
Total ungapped length3,140,430
Number of contigs71
Contig N5093,487
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)71

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,140,430713,140,43093,48700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mediterraneibacter glycyrrhizinilyticusMediterraneibacter glycyrrhizinilyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008691045.1Mediterraneibacter catenaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.9480.7879.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly