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ASM3037387v1

Organism name:
Desulfovibrio piger (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 104_BHI
BioSample:
SAMN34359371
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030373875.1 (latest)
RefSeq assembly accession:
GCF_030373875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUDEP01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
226x
Sequencing technology:
Illumina NextSeq

IDs: 17206141 [UID] 44129618 [GenBank] 44303808 [RefSeq]

See Genome Information for Desulfovibrio piger

There are 65 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2023 18:50:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,474
CDSs (total)::2,398
Genes (coding)::2,383
CDSs (with protein)::2,383
Genes (RNA)::76
rRNAs::1, 2 (16S, 23S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::67
ncRNAs::6
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::4 of 15
Pseudo Genes (incomplete)::10 of 15
Pseudo Genes (internal stop)::4 of 15
Pseudo Genes (multiple problems)::2 of 15
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,735,749
Total ungapped length2,735,749
Number of contigs102
Contig N5052,984
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)102

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,735,7491022,735,74952,98400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfovibrio pigerDesulfovibrio piger

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000156375.1Desulfovibrio piger ATCC 29098suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000156375.1Desulfovibrio pigersuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.9683.9481.25
Best-match type94.9683.9481.25

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna