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ASM3037382v1

Organism name:
Ligilactobacillus agilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 147_Schadl_VitK
BioSample:
SAMN34359389
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030373825.1 (latest)
RefSeq assembly accession:
GCF_030373825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUDED01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
370x
Sequencing technology:
Illumina NextSeq

IDs: 17206101 [UID] 44129528 [GenBank] 44301468 [RefSeq]

See Genome Information for Ligilactobacillus agilis

There are 53 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2023 18:47:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,201
CDSs (total)::2,146
Genes (coding)::2,100
CDSs (with protein)::2,100
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::1 (5S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::46
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::9 of 46
Pseudo Genes (incomplete)::35 of 46
Pseudo Genes (internal stop)::9 of 46
Pseudo Genes (multiple problems)::7 of 46
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,225,272
Total ungapped length2,225,272
Number of contigs89
Contig N5059,554
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)89

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,225,272892,225,27259,55400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ligilactobacillus agilisLigilactobacillus agilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001436215.1Ligilactobacillus agilis DSM 20509type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001436215.1Ligilactobacillus agilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6176.9383.22
Best-match type97.6176.9383.22

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna