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ASM3037364v1

  • Anomalous assembly.
Organism name:
Enterocloster aldenensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ET318
BioSample:
SAMN34359456
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_030373645.1 (latest)
RefSeq assembly accession:
GCF_030373645.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUDCM01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
96x
Sequencing technology:
Illumina MiSeq

IDs: 17206011 [UID] 44129348 [GenBank] 44303328 [RefSeq]

See Genome Information for Enterocloster aldenensis

There are 43 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2023 18:58:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,889
CDSs (total)::5,819
Genes (coding)::5,733
CDSs (with protein)::5,733
Genes (RNA)::70
rRNAs::1, 2 (16S, 23S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::86
CDSs (without protein)::86
Pseudo Genes (ambiguous residues)::0 of 86
Pseudo Genes (frameshifted)::25 of 86
Pseudo Genes (incomplete)::63 of 86
Pseudo Genes (internal stop)::16 of 86
Pseudo Genes (multiple problems)::17 of 86
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,212,221
Total ungapped length6,212,221
Number of contigs140
Contig N50101,947
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)140

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,212,2211406,212,221101,94700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterocloster aldenensisEnterocloster aldenensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900566185.1Lachnoclostridium pacaensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.1126.5761.78

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna