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ASM3037227v1

Organism name:
Pseudoflavonifractor phocaeensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 69_Shaedler_sukc20
BioSample:
SAMN34359423
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030372275.1 (latest)
RefSeq assembly accession:
GCF_030372275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUDDJ01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
198x
Sequencing technology:
Illumina NextSeq

IDs: 17205331 [UID] 44127988 [GenBank] 44298888 [RefSeq]

See Genome Information for Pseudoflavonifractor phocaeensis

There are 12 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2023 19:07:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,901
CDSs (total)::2,847
Genes (coding)::2,798
CDSs (with protein)::2,798
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::5 of 49
Pseudo Genes (incomplete)::43 of 49
Pseudo Genes (internal stop)::2 of 49
Pseudo Genes (multiple problems)::1 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,972,097
Total ungapped length2,972,097
Number of contigs58
Contig N5095,217
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,972,097582,972,09795,21700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoflavonifractor phocaeensisPseudoflavonifractor phocaeensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169255.2Pseudoflavonifractor capillosussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.6916.0311.24

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna