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ASM3037191v1

Organism name:
Limosilactobacillus vaginalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 40_SSukc10
BioSample:
SAMN34359413
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030371915.1 (latest)
RefSeq assembly accession:
GCF_030371915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUDDO01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
251x
Sequencing technology:
Illumina NextSeq

IDs: 17205151 [UID] 44127638 [GenBank] 44301588 [RefSeq]

See Genome Information for Limosilactobacillus vaginalis

There are 57 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2023 18:35:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,872
CDSs (total)::1,817
Genes (coding)::1,789
CDSs (with protein)::1,789
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::28
CDSs (without protein)::28
Pseudo Genes (ambiguous residues)::0 of 28
Pseudo Genes (frameshifted)::12 of 28
Pseudo Genes (incomplete)::8 of 28
Pseudo Genes (internal stop)::12 of 28
Pseudo Genes (multiple problems)::4 of 28
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,883,654
Total ungapped length1,883,654
Number of contigs111
Contig N5041,227
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,883,6541111,883,65441,22700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus vaginalisLimosilactobacillus vaginalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001435915.1Limosilactobacillus vaginalis DSM 5837 = ATCC 49540type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001435915.1Limosilactobacillus vaginalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9182.8287.29
Best-match type98.9182.8287.29

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna