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ASM3037186v1

Organism name:
Phocaeicola barnesiae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 46_SSukc10
BioSample:
SAMN34359415
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2023/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030371865.1 (latest)
RefSeq assembly accession:
GCF_030371865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUDDN01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
122x
Sequencing technology:
Illumina NextSeq

IDs: 17205121 [UID] 44127578 [GenBank] 44301908 [RefSeq]

See Genome Information for Phocaeicola barnesiae

There are 17 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2023 18:55:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,980
CDSs (total)::2,890
Genes (coding)::2,838
CDSs (with protein)::2,838
Genes (RNA)::90
rRNAs::2, 1, 4 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1, 4 (16S, 23S)
tRNAs::81
ncRNAs::2
Pseudo Genes (total)::52
CDSs (without protein)::52
Pseudo Genes (ambiguous residues)::0 of 52
Pseudo Genes (frameshifted)::16 of 52
Pseudo Genes (incomplete)::33 of 52
Pseudo Genes (internal stop)::13 of 52
Pseudo Genes (multiple problems)::9 of 52
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,524,058
Total ungapped length3,524,058
Number of contigs45
Contig N50301,699
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,524,058453,524,058301,69900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola barnesiaePhocaeicola barnesiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000374585.1Phocaeicola barnesiae DSM 18169 = JCM 13652type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000374585.1Phocaeicola barnesiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2478.8876.83
Best-match type98.2478.8876.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna