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ASM3028566v1

Organism name:
Amycolatopsis mongoliensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4-36
BioSample:
SAMN35578144
BioProject:
PRJNA978978
Submitter:
Chungnam National University
Date:
2023/06/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_030285665.1 (latest)
RefSeq assembly accession:
GCF_030285665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye, De novo assembly v. 2023.05.15
Expected final version:
yes
Genome coverage:
42x
Sequencing technology:
Oxford Nanopore MinION

IDs: 16923011 [UID] 43481118 [GenBank] 43581908 [RefSeq]

See Genome Information for Amycolatopsis mongoliensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/18/2024 10:32:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::10,278
CDSs (total)::10,208
Genes (coding)::10,059
CDSs (with protein)::10,059
Genes (RNA)::70
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::149
CDSs (without protein)::149
Pseudo Genes (ambiguous residues)::0 of 149
Pseudo Genes (frameshifted)::63 of 149
Pseudo Genes (incomplete)::103 of 149
Pseudo Genes (internal stop)::4 of 149
Pseudo Genes (multiple problems)::21 of 149
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,811,244
Total ungapped length10,811,244
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030285675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP127295.1=NZ_CP127295.1

Assembly statistics

MoleculeTotal
Length
Chromosome 10,811,244

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Amycolatopsis mongoliensisAmycolatopsis mongoliensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902497555.1Amycolatopsis camponotitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.8873.2074.94

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected