U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



sMobBir1.hap2

Organism name:
Mobula birostris (giant manta)
Isolate:
sMobBir1
Sex:
female
BioSample:
SAMN32746370
BioProject:
PRJNA924118
Submitter:
Vertebrate Genomes Project
Date:
2023/05/22
Assembly type:
haploid (haplotype 2)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030035685.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JARUQP01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; yahs v. 1.2a + galaxy1
Expected final version:
no
Genome coverage:
32.0x
Sequencing technology:
PacBio Sequel II HiFi; Arima Hi-C v2
Linked assembly:
GCA_030028105.1 (haplotype 1)

IDs: 16642411 [UID] 42810618 [GenBank]

See Genome Information for Mobula birostris

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The order and orientation of Chromosome 13 and Chromosome 28 for both haplotypes is undetermined; on haplotype 1 this is the region between 13.5 Mbp - 40 Mbp. Haplotype 1 assembly is 
380 Mb bigger than the haplotype 2 ... assembly, but haplotype 2 has 3x fewer gaps  more

Global statistics

Total sequence length3,634,101,053
Total ungapped length3,579,117,238
Gaps between scaffolds0
Number of scaffolds1,558
Scaffold N50152,352,395
Scaffold L509
Number of contigs3,300
Contig N508,612,779
Contig L50100
Total number of chromosomes and plasmids33
Number of component sequences (WGS or clone)1,558

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_030035735.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM057523.1n/an/a0
Chromosome 2CM057524.1n/an/a3
Chromosome 3CM057525.1n/an/a0
Chromosome 4CM057526.1n/an/a0
Chromosome 5CM057527.1n/an/a0
Chromosome 6CM057528.1n/an/a0
Chromosome 7CM057529.1n/an/a1
Chromosome 8CM057530.1n/an/a0
Chromosome 9CM057531.1n/an/a0
Chromosome 10CM057532.1n/an/a0
Chromosome 11CM057533.1n/an/a0
Chromosome 12CM057534.1n/an/a0
Chromosome 13CM057535.1n/an/a0
Chromosome 14CM057536.1n/an/a0
Chromosome 15CM057537.1n/an/a0
Chromosome 16CM057538.1n/an/a0
Chromosome 17CM057539.1n/an/a0
Chromosome 18CM057540.1n/an/a0
Chromosome 19CM057541.1n/an/a0
Chromosome 20CM057542.1n/an/a0
Chromosome 21CM057543.1n/an/a0
Chromosome 22CM057544.1n/an/a0
Chromosome 23CM057545.1n/an/a0
Chromosome 24CM057546.1n/an/a0
Chromosome 25CM057547.1n/an/a0
Chromosome 26CM057548.1n/an/a0
Chromosome 27CM057549.1n/an/a0
Chromosome 28CM057550.1n/an/a0
Chromosome 29CM057551.1n/an/a0
Chromosome 30CM057552.1n/an/a0
Chromosome 31CM057553.1n/an/a0
Chromosome 32CM057554.1n/an/a0
Chromosome XCM057555.1n/an/a0
unplacedn/an/an/a1,521

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,634,101,0531,5583,579,117,238152,352,3951,7420
Chromosome 1Assembled molecule254,171,7681252,563,684254,171,768580
Chromosome 2AllAssembled moleculeUnlocalized scaffolds244,463,312241,392,5463,070,766413240,568,885237,850,2512,718,634241,392,546241,392,546943,94481756000
Chromosome 3Assembled molecule231,256,3761229,861,149231,256,376620
Chromosome 4Assembled molecule201,653,8101199,344,842201,653,810590
Chromosome 5Assembled molecule201,870,5971198,939,050201,870,597950
Chromosome 6Assembled molecule193,527,5351192,189,154193,527,535780
Chromosome 7AllAssembled moleculeUnlocalized scaffolds188,467,871187,815,962651,909211185,964,224185,312,315651,909187,815,962187,815,962651,90952520000
Chromosome 8Assembled molecule169,512,6881166,759,799169,512,688910
Chromosome 9Assembled molecule152,352,3951151,109,987152,352,395650
Chromosome 10Assembled molecule144,853,1801141,754,679144,853,1801060
Chromosome 11Assembled molecule113,284,3771110,916,383113,284,377450
Chromosome 12Assembled molecule114,398,1181112,584,192114,398,118460
Chromosome 13Assembled molecule71,281,395165,728,17371,281,3951430
Chromosome 14Assembled molecule97,519,854196,284,05497,519,854290
Chromosome 15Assembled molecule83,691,259183,003,58583,691,259460
Chromosome 16Assembled molecule80,397,739180,275,80880,397,739200
Chromosome 17Assembled molecule73,581,883173,454,09273,581,88390
Chromosome 18Assembled molecule69,613,699168,527,56769,613,699340
Chromosome 19Assembled molecule70,506,456169,854,39970,506,456230
Chromosome 20Assembled molecule63,885,466159,222,50063,885,466560
Chromosome 21Assembled molecule67,168,744166,515,94867,168,744230
Chromosome 22Assembled molecule62,548,856162,273,31362,548,856280
Chromosome 23Assembled molecule62,419,880162,090,73962,419,880160
Chromosome 24Assembled molecule63,059,364162,448,87463,059,364250
Chromosome 25Assembled molecule61,759,117160,778,82961,759,117310
Chromosome 26Assembled molecule53,317,994153,104,56653,317,994100
Chromosome 27Assembled molecule46,417,851146,276,16046,417,85190
Chromosome 28Assembled molecule38,081,404134,047,61338,081,404670
Chromosome 29Assembled molecule32,397,426131,025,68832,397,426290
Chromosome 30Assembled molecule41,933,250141,890,80141,933,250120
Chromosome 31Assembled molecule39,162,971139,151,11539,162,97150
Chromosome 32Assembled molecule31,093,915130,580,09931,093,91590
Chromosome XAssembled molecule76,223,844174,400,91176,223,844790
unplacedAssembled molecule138,226,6591,521135,626,376120,0622010