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ASM2590901v1

Organism name:
Streptococcus anginosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB7514
BioSample:
SAMN31407727
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2022/10/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_025909015.1 (latest)
RefSeq assembly accession:
GCF_025909015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAPAII01
Assembly method:
SPAdes v. v3.14.1
Expected final version:
yes
Genome coverage:
235.51x
Sequencing technology:
Illumina NovaSeq

IDs: 14247591 [UID] 37014708 [GenBank] 37087048 [RefSeq]

See Genome Information for Streptococcus anginosus

There are 347 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/25/2022 11:09:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,383
CDSs (total)::2,327
Genes (coding)::2,200
CDSs (with protein)::2,200
Genes (RNA)::56
rRNAs::1, 1, 4 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::127
CDSs (without protein)::127
Pseudo Genes (ambiguous residues)::0 of 127
Pseudo Genes (frameshifted)::68 of 127
Pseudo Genes (incomplete)::50 of 127
Pseudo Genes (internal stop)::49 of 127
Pseudo Genes (multiple problems)::33 of 127
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,115,837
Total ungapped length2,115,837
Number of contigs409
Contig N5080,559
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)409

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,115,8374092,115,83780,55900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus anginosusStreptococcus anginosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002088025.1Streptococcus anginosus SK52 = DSM 20563type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002088025.1Streptococcus anginosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.2973.6581.83
Best-match type95.2973.6581.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna