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Xyllon1

Organism name:
Xylaria longipes (ascomycete fungi)
Infraspecific name:
Culture-collection: CBS:148.73
Infraspecific name:
Strain: CBS 148.73
BioSample:
SAMN12794364
BioProject:
PRJNA567186
Submitter:
DOE Joint Genome Institute
Date:
2022/09/08
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_025201785.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAJLRH01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
87.04562443x
Sequencing technology:
Illumina

IDs: 14029901 [UID] 36456348 [GenBank]

See Genome Information for Xylaria longipes

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Xyllon1
JGI Project ID: 1224616
The DNA was provided by Jana U'Ren (juren@email.arizona.edu)
The strain is available from Westerdijk Fungal Biodiversity Institute CBS-KNAW Collection, Utrecht, The Netherlands
Contacts: Jana M. U'Ren (juren@email.arizona.edu)
Assembly and annotation done by JGI.
The JGI and collaborators endorse ... the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length50,750,822
Total ungapped length50,748,792
Gaps between scaffolds0
Number of scaffolds974
Scaffold N50239,049
Scaffold L5057
Number of contigs1,054
Contig N50205,765
Contig L5072
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,054

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced50,750,82297450,748,792239,049800