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IRD_Cohum_1.0

Organism name:
Coffea humblotiana (eudicots)
Infraspecific name:
Ecotype: Mayotte
Isolate:
BM19/20
BioSample:
SAMN16243251
BioProject:
PRJNA665152
Submitter:
Institut de Recherche pour le Developpement
Date:
2022/04/22
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023065735.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACYVW01
Assembly method:
FALCON v. 0.5
Expected final version:
yes
Genome coverage:
102.0x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 12582561 [UID] 32893658 [GenBank]

See Genome Information for Coffea humblotiana

History (Show revision history)

Comment

Global statistics

Total sequence length420,721,971
Total ungapped length420,680,571
Gaps between scaffolds0
Number of scaffolds390
Scaffold N5029,629,744
Scaffold L506
Number of contigs804
Contig N501,451,456
Contig L5061
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)390

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_023065925.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM041208.1n/an/a0
Chromosome 2CM041209.1n/an/a0
Chromosome 3CM041210.1n/an/a0
Chromosome 4CM041211.1n/an/a0
Chromosome 5CM041212.1n/an/a0
Chromosome 6CM041213.1n/an/a0
Chromosome 7CM041214.1n/an/a0
Chromosome 8CM041215.1n/an/a0
Chromosome 9CM041216.1n/an/a0
Chromosome 10CM041217.1n/an/a0
Chromosome 11CM041218.1n/an/a0
unplacedn/an/an/a326

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All418,074,721337418,033,32129,629,7444140
Chromosome 135,192,332135,188,43235,192,332390
Chromosome 257,522,413157,518,31357,522,413410
Chromosome 328,019,604128,013,90428,019,604570
Chromosome 429,388,200129,385,00029,388,200320
Chromosome 529,861,901129,858,30129,861,901360
Chromosome 648,244,489148,240,58948,244,489390
Chromosome 729,629,744129,626,84429,629,744290
Chromosome 829,063,762129,060,46229,063,762330
Chromosome 926,432,012126,428,91226,432,012310
Chromosome 1031,790,949131,786,84931,790,949410
Chromosome 1129,159,155129,155,55529,159,155360
unplaced43,770,16032643,770,160251,74600
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chloroplast PltdAllAssembled moleculeUnlocalized scaffolds2,647,25002,647,250530532,647,25002,647,25057,503057,503000000