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ASM2239453v1

Organism name:: Dyella terrae (g-proteobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: Ely Copper Mine
BioSample:: SAMN22349565
BioProject:: PRJNA771916
Submitter:: Universite de Poitiers ecologie et Biologie des Interactions, UMR CNRS 7267
Date:: 2022/02/25
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_022394535.1 (latest)
RefSeq assembly accession:: GCF_022394535.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: flye v. 2.8
Expected final version:: yes
Genome coverage:: 540.0x
Sequencing technology:: Oxford Nanopore GridION; Illumina MiSeq

IDs: 12226691 [UID] 32011468 [GenBank] 32028248 [RefSeq]

See Genome Information for Dyella terrae

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022394535.1	=	GCF_022394535.1	ASM2239453v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Lesley-Ann Giddings Assistant Professor Department of Chemistry Smith College Ford Hall 013 Northampton, MA 01063
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_022394535.1-RS_2024_05_06
Annotation Date::05/06/2024 14:34:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,799
CDSs (total)::4,732
Genes (coding)::4,609
CDSs (with protein)::4,609
Genes (RNA)::67
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::51
ncRNAs::10
Pseudo Genes (total)::124
CDSs (without protein)::123
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::81 of 124
Pseudo Genes (incomplete)::40 of 124
Pseudo Genes (internal stop)::10 of 124
Pseudo Genes (multiple problems)::7 of 124
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,355,565
Total ungapped length	5,355,565
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	82.69	14.57	18.47
Best-match type	85.04	57.17	61.34

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ASM2239453v1

See Genome Information for Dyella terrae

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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