U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2053655v1

Organism name:
Camellia sinensis var. lasiocalyx (black tea)
Infraspecific name:
Cultivar: SMP-1
Infraspecific name:
Ecotype: Cambod
Isolate:
SMP-1
BioSample:
SAMN19222202
BioProject:
PRJNA730185
Submitter:
UPASI Tea Research Institute
Date:
2021/10/21
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_020536555.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAHQJV01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
no
Reference guided assembly:
GCA_017311205.1
Genome coverage:
112.0x
Sequencing technology:
Illumina HiSeq

IDs: 11277161 [UID] 29717958 [GenBank]

See Genome Information for Camellia sinensis

There are 17 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,062,765,809
Total ungapped length3,060,789,630
Gaps between scaffolds0
Number of scaffolds163
Scaffold N50213,459,538
Scaffold L507
Number of contigs4,170
Contig N501,887,457
Contig L50461
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)163

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_020536575.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM035962.1n/an/a0
Chromosome 2CM035963.1n/an/a0
Chromosome 3CM035964.1n/an/a0
Chromosome 4CM035965.1n/an/a0
Chromosome 5CM035966.1n/an/a0
Chromosome 6CM035967.1n/an/a0
Chromosome 7CM035968.1n/an/a0
Chromosome 8CM035969.1n/an/a0
Chromosome 9CM035970.1n/an/a0
Chromosome 10CM035971.1n/an/a0
Chromosome 11CM035972.1n/an/a0
Chromosome 12CM035973.1n/an/a0
Chromosome 13CM035974.1n/an/a0
Chromosome 14CM035975.1n/an/a0
Chromosome 15CM035976.1n/an/a0
unplacedn/an/an/a148

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,062,765,8091633,060,789,630213,459,5384,0070
Chromosome 1260,814,0701260,290,951260,814,0703490
Chromosome 2229,725,3781229,453,764229,725,3782750
Chromosome 3229,472,2111229,449,546229,472,2112180
Chromosome 4236,917,7761236,455,453236,917,7764750
Chromosome 5213,459,5381213,422,800213,459,5381920
Chromosome 6212,230,4621212,203,072212,230,4622510
Chromosome 7263,604,4251263,532,674263,604,4256220
Chromosome 8214,912,0461214,886,627214,912,0462290
Chromosome 9200,062,8241200,036,134200,062,8241950
Chromosome 10189,540,2831189,517,541189,540,2831830
Chromosome 11138,810,5771138,794,508138,810,5771510
Chromosome 12170,682,5011170,653,895170,682,5011920
Chromosome 13167,400,7041167,030,193167,400,7042800
Chromosome 14162,246,5601162,192,096162,246,5602520
Chromosome 15141,157,8191141,141,741141,157,8191430
unplaced31,728,63514831,728,635365,76600