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ASM1967022v1

Organism name:: Salmonella enterica subsp. enterica serovar 4,[5],12:i:- (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: L-4233
BioSample:: SAMD00097500
BioProject:: PRJDB6430
Submitter:: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:: 2021/05/26
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_019670225.1 (latest)
RefSeq assembly accession:: GCF_019670225.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Canu v. 1.4; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v. 20140604
Genome coverage:: 210x
Sequencing technology:: Sequel; NextSeq500

IDs: 10733701 [UID] 28443998 [GenBank] 28496228 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 527483 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019670225.1	=	GCF_019670225.1	ASM1967022v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Annotated by DFAST v.1.0.8 (https://dfast.nig.ac.jp)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::09/23/2023 03:31:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,815
CDSs (total)::4,693
Genes (coding)::4,579
CDSs (with protein)::4,579
Genes (RNA)::122
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::15
Pseudo Genes (total)::114
CDSs (without protein)::114
Pseudo Genes (ambiguous residues)::0 of 114
Pseudo Genes (frameshifted)::32 of 114
Pseudo Genes (incomplete)::92 of 114
Pseudo Genes (internal stop)::19 of 114
Pseudo Genes (multiple problems)::27 of 114
Pseudo Genes (short protein)::1 of 114
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,926,461
Total ungapped length	4,926,461
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP023292.1	=	NZ_AP023292.1
Plasmid pSAL4233-1	AP023293.1	=	NZ_AP023293.1

Molecule	Total Length
All	4,926,461
Chromosome	4,918,843
Plasmid pSAL4233-1	7,618

	ANI	Query coverage	Subject coverage
Declared type	99.92	96.02	95.16
Best-match type	99.92	96.02	95.16

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ASM1967022v1

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 527483 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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