U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



BAv1.1

Organism name:
Buddleja alternifolia (eudicots)
Isolate:
LA-IB0
BioSample:
SAMN13022353
BioProject:
PRJNA577174
Submitter:
Ori-Gene Co. Ltd.
Date:
2021/07/30
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019426215.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WHWC01
Assembly method:
SMARTDENOVO v. 1.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio Sequel

IDs: 10613191 [UID] 28144448 [GenBank]

See Genome Information for Buddleja alternifolia

History (Show revision history)

Comment

Global statistics

Total sequence length853,754,563
Total ungapped length853,708,118
Gaps between scaffolds0
Number of scaffolds439
Scaffold N5043,104,400
Scaffold L509
Number of contigs1,074
Contig N502,020,346
Contig L50125
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)439

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_019426225.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM033390.1n/an/a0
Chromosome 2CM033391.1n/an/a0
Chromosome 3CM033392.1n/an/a0
Chromosome 4CM033393.1n/an/a0
Chromosome 5CM033394.1n/an/a0
Chromosome 6CM033395.1n/an/a0
Chromosome 7CM033396.1n/an/a0
Chromosome 8CM033397.1n/an/a0
Chromosome 9CM033398.1n/an/a0
Chromosome 10CM033399.1n/an/a0
Chromosome 11CM033400.1n/an/a0
Chromosome 12CM033401.1n/an/a0
Chromosome 13CM033402.1n/an/a0
Chromosome 14CM033403.1n/an/a0
Chromosome 15CM033404.1n/an/a0
Chromosome 16CM033405.1n/an/a0
Chromosome 17CM033406.1n/an/a0
Chromosome 18CM033407.1n/an/a0
Chromosome 19CM033408.1n/an/a0
unplacedn/an/an/a418

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All853,114,234437853,067,78943,104,4006350
Chromosome 162,290,481162,286,92362,290,481490
Chromosome 259,508,640159,505,80659,508,640400
Chromosome 354,848,017154,844,93254,848,017390
Chromosome 452,612,365152,610,36352,612,365300
Chromosome 549,565,878149,562,87149,565,878440
Chromosome 645,860,143145,857,57045,860,143330
Chromosome 743,948,813143,946,17043,948,813380
Chromosome 843,292,756143,289,80243,292,756440
Chromosome 943,104,400143,102,48243,104,400300
Chromosome 1041,689,058141,686,10841,689,058370
Chromosome 1140,984,290140,982,32440,984,290270
Chromosome 1239,483,448139,479,84639,483,448430
Chromosome 1338,011,710138,008,90138,011,710310
Chromosome 1437,323,954137,321,79837,323,954350
Chromosome 1535,696,381135,695,44135,696,381120
Chromosome 1634,632,935134,630,74434,632,935330
Chromosome 1734,225,758134,224,24534,225,758190
Chromosome 1833,029,929133,027,65533,029,929300
Chromosome 1932,737,826132,736,35632,737,826210
unplaced30,267,45241830,267,452101,83200
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All640,3292640,329499,19100
Mitochondrion MT499,1911499,191499,19100
Chloroplast Pltd141,1381141,138141,13800