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ASM1921888v1

Organism name:
Bordetella sp. BOR01 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BOR01
BioSample:
SAMN19994144
BioProject:
PRJNA660495
Submitter:
University of Chicago
Date:
2021/07/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_019218885.1 (latest)
RefSeq assembly accession:
GCF_019218885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHUWT01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
43.008052x
Sequencing technology:
Illumina MiSeq

IDs: 10498221 [UID] 27861818 [GenBank] 27909598 [RefSeq]

See Genome Information for Bordetella sp. BOR01

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/09/2021 11:54:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,878
CDSs (total)::5,820
Genes (coding)::5,796
CDSs (with protein)::5,796
Genes (RNA)::58
rRNAs::3, 3, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (5S, 16S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::24
CDSs (without protein)::24
Pseudo Genes (ambiguous residues)::0 of 24
Pseudo Genes (frameshifted)::6 of 24
Pseudo Genes (incomplete)::16 of 24
Pseudo Genes (internal stop)::4 of 24
Pseudo Genes (multiple problems)::2 of 24
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,178,062
Total ungapped length6,178,062
Number of contigs29
Contig N501,484,024
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,178,062296,178,0621,484,02400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bordetella sp. BOR01Bordetella sp. BOR01

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000067205.1Bordetella petriisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.3851.0159.60

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna