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ASM1839681v1

Organism name:
Candidatus Bathyarchaeota archaeon (archaea)
Taxonomy check:
Inconclusive
Isolate:
DRTY-6_2_bin_141
BioSample:
SAMN18839131
BioProject:
PRJNA544494
Submitter:
The University of Texas at Austin
Date:
2021/05/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_018396815.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGTQY01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
16.2x
Sequencing technology:
Illumina HiSeq

IDs: 10068581 [UID] 26777818 [GenBank]

See Genome Information for Candidatus Bathyarchaeota archaeon

There are 574 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/26/2021 13:28:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,606
CDSs (total)::1,556
Genes (coding)::1,540
CDSs (with protein)::1,540
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::2
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::11 of 16
Pseudo Genes (incomplete)::2 of 16
Pseudo Genes (internal stop)::7 of 16
Pseudo Genes (multiple problems)::4 of 16
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,485,783
Total ungapped length1,485,783
Number of contigs12
Contig N50354,801
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,485,783121,485,783354,80100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Bathyarchaeota archaeonCandidatus Bathyarchaeota archaeon

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana