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ASM1812941v1

Organism name:
Bradyrhizobium sp. AUGA SZCCT0042 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AUGA SZCCT0042
BioSample:
SAMN17707928
BioProject:
PRJNA698083
Submitter:
The Chinese University of Hong Kong
Date:
2021/04/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_018129415.1 (latest)
RefSeq assembly accession:
GCF_018129415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFCMO01
Assembly method:
SPAdes v. v3.10.1
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina HiSeq

IDs: 9926541 [UID] 26451498 [GenBank] 26703088 [RefSeq]

See Genome Information for Bradyrhizobium sp. AUGA SZCCT0042

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/03/2021 15:16:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,487
CDSs (total)::7,412
Genes (coding)::7,294
CDSs (with protein)::7,294
Genes (RNA)::75
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::67
ncRNAs::5
Pseudo Genes (total)::118
CDSs (without protein)::118
Pseudo Genes (ambiguous residues)::0 of 118
Pseudo Genes (frameshifted)::39 of 118
Pseudo Genes (incomplete)::83 of 118
Pseudo Genes (internal stop)::10 of 118
Pseudo Genes (multiple problems)::12 of 118
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,986,826
Total ungapped length7,986,826
Number of contigs70
Contig N50230,593
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,986,826707,986,826230,59300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium sp. AUGA SZCCT0042Bradyrhizobium sp. AUGA SZCCT0042

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001440405.1Bradyrhizobium valentinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.3844.3940.17

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna