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ASM1764358v1

Organism name:
Maricaulis sp. (a-proteobacteria)
Taxonomy check:
OK
Isolate:
HCUG1438-2
BioSample:
SAMN16237246
BioProject:
PRJNA664924
Submitter:
China University of Geosciences
Date:
2021/03/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_017643585.1 (latest)
RefSeq assembly accession:
GCF_017643585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAEPND01
Assembly method:
MEGAHIT v. 1.1.3
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina NovaSeq

IDs: 9681271 [UID] 25894068 [GenBank] 44851118 [RefSeq]

See Genome Information for Maricaulis sp.

There are 20 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/11/2021 20:20:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,030
CDSs (total)::2,987
Genes (coding)::2,966
CDSs (with protein)::2,966
Genes (RNA)::43
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::37
ncRNAs::3
Pseudo Genes (total)::21
CDSs (without protein)::21
Pseudo Genes (ambiguous residues)::0 of 21
Pseudo Genes (frameshifted)::8 of 21
Pseudo Genes (incomplete)::5 of 21
Pseudo Genes (internal stop)::9 of 21
Pseudo Genes (multiple problems)::1 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,096,523
Total ungapped length3,096,523
Number of contigs46
Contig N50181,065
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,096,523463,096,523181,06500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Maricaulis sp.Maricaulis sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005871165.1Maricaulis alexandriitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.7211.9411.04

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna