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ASM1690257v1

Organism name:
Pseudoflavonifractor capillosus (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: An386a
BioSample:
SAMN14913540
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2021/02/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_016902575.1 (latest)
RefSeq assembly accession:
GCF_016902575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACSNZ01
Assembly method:
IDBA_UD v. idba-v1.1.3
Expected final version:
yes
Genome coverage:
92x
Sequencing technology:
Illumina NextSeq

IDs: 9296551 [UID] 25026708 [GenBank] 25065498 [RefSeq]

See Genome Information for Pseudoflavonifractor capillosus

There are 10 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/26/2020 18:23:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,469
CDSs (total)::2,391
Genes (coding)::2,344
CDSs (with protein)::2,344
Genes (RNA)::78
rRNAs::4, 6, 5 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::2, 6, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::14 of 47
Pseudo Genes (incomplete)::29 of 47
Pseudo Genes (internal stop)::7 of 47
Pseudo Genes (multiple problems)::3 of 47
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,519,586
Total ungapped length2,519,586
Number of contigs190
Contig N5049,065
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)190

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,519,5861902,519,58649,06500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoflavonifractor capillosusPseudoflavonifractor capillosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000169255.2Pseudoflavonifractor capillosus ATCC 29799suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169255.2Pseudoflavonifractor capillosussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.8012.627.50
Best-match type85.8012.627.50

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena