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ASM1690229v1

Organism name:
Bacteroides caecigallinarum (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: An428a
BioSample:
SAMN14913554
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2021/02/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_016902295.1 (latest)
RefSeq assembly accession:
GCF_016902295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACJLQ01
Assembly method:
IDBA_UD v. idba-v1.1.3
Expected final version:
yes
Genome coverage:
72x
Sequencing technology:
Illumina NextSeq

IDs: 9296401 [UID] 25026408 [GenBank] 25057838 [RefSeq]

See Genome Information for Bacteroides caecigallinarum

There are 12 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2020 13:20:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,014
CDSs (total)::2,876
Genes (coding)::2,803
CDSs (with protein)::2,803
Genes (RNA)::138
rRNAs::10, 15, 38 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::8, 15, 38 (5S, 16S, 23S)
tRNAs::73
ncRNAs::2
Pseudo Genes (total)::73
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::36 of 73
Pseudo Genes (incomplete)::33 of 73
Pseudo Genes (internal stop)::20 of 73
Pseudo Genes (multiple problems)::13 of 73
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,378,958
Total ungapped length3,378,958
Number of contigs265
Contig N5068,654
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)265

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,378,9582653,378,95868,65400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides caecigallinarumBacteroides caecigallinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025567135.1Bacteroides cellulolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.7961.7357.72

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna