U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1689972v1

Organism name:
Bifidobacterium pullorum subsp. saeculare (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: An836
BioSample:
SAMN14913651
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2021/02/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_016899725.1 (latest)
RefSeq assembly accession:
GCF_016899725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACLYU01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
188x
Sequencing technology:
Illumina MiSeq

IDs: 9295111 [UID] 25023828 [GenBank] 25057318 [RefSeq]

See Genome Information for Bifidobacterium pullorum

There are 24 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/14/2020 03:47:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,115
CDSs (total)::2,044
Genes (coding)::1,974
CDSs (with protein)::1,974
Genes (RNA)::71
rRNAs::1, 2, 4 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 3 (16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::70
CDSs (without protein)::70
Pseudo Genes (ambiguous residues)::0 of 70
Pseudo Genes (frameshifted)::39 of 70
Pseudo Genes (incomplete)::30 of 70
Pseudo Genes (internal stop)::9 of 70
Pseudo Genes (multiple problems)::8 of 70
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,330,831
Total ungapped length2,330,831
Number of contigs311
Contig N50100,784
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)311

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,330,8313112,330,831100,78400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium pullorum subsp. saeculareBifidobacterium pullorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000741215.1Bifidobacterium pullorum subsp. gallinarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010667645.1Bifidobacterium platyrrhinorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.0523.2025.03
Best-match type85.7428.3325.26

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna