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ASM1677184v1

Organism name:
Lelliottia aquatilis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TZW17
BioSample:
SAMN17050145
BioProject:
PRJNA680915
Submitter:
TZW: DVGW-Technologiezentrum Wasser
Date:
2021/01/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016771845.1 (latest)
RefSeq assembly accession:
GCF_016771845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAENMQ01
Assembly method:
Unicycler v. 0.4.6.0
Expected final version:
yes
Genome coverage:
360x
Sequencing technology:
Illumina NextSeq

IDs: 9202351 [UID] 24778638 [GenBank] 24786028 [RefSeq]

See Genome Information for Lelliottia aquatilis

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/05/2021 15:52:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,569
CDSs (total)::4,472
Genes (coding)::4,423
CDSs (with protein)::4,423
Genes (RNA)::97
rRNAs::6, 1, 3 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::2, 3 (5S, 23S)
tRNAs::78
ncRNAs::9
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::24 of 49
Pseudo Genes (incomplete)::20 of 49
Pseudo Genes (internal stop)::22 of 49
Pseudo Genes (multiple problems)::14 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,835,026
Total ungapped length4,835,026
Number of contigs27
Contig N50233,298
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)27

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,835,026274,835,026233,29800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lelliottia aquatilisLelliottia aquatilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002923025.1Lelliottia aquatilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002923025.1Lelliottia aquatilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8389.5390.67
Best-match type98.8389.5390.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna