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ASM1675974v1

Organism name:
Bifidobacterium longum subsp. longum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 67B
BioSample:
SAMN17315590
BioProject:
PRJNA692178
Submitter:
University of Parma
Date:
2021/01/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_016759745.1 (latest)
RefSeq assembly accession:
GCF_016759745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAERWH01
Assembly method:
SPAdes v. 3.14
Expected final version:
yes
Genome coverage:
117x
Sequencing technology:
Illumina MiSeq

IDs: 9191181 [UID] 24742918 [GenBank] 24780288 [RefSeq]

See Genome Information for Bifidobacterium longum

There are 1756 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/19/2021 15:48:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,090
CDSs (total)::2,021
Genes (coding)::1,968
CDSs (with protein)::1,968
Genes (RNA)::69
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::19 of 53
Pseudo Genes (incomplete)::36 of 53
Pseudo Genes (internal stop)::2 of 53
Pseudo Genes (multiple problems)::4 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,386,390
Total ungapped length2,386,390
Number of contigs29
Contig N50167,326
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,386,390292,386,390167,32600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium longum subsp. longumBifidobacterium longum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000196555.1Bifidobacterium longum subsp. longum JCM 1217type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000196555.1Bifidobacterium longumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8783.3283.36
Best-match type98.8783.3283.36

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna