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ASM1674641v1

  • Anomalous assembly.
Organism name:
Mangifera indica (mango)
Infraspecific name:
Cultivar: Tommy-Atkins
BioSample:
SAMN08930917
BioProject:
PRJNA450143
Submitter:
BioCI
Date:
2021/01/25
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_016746415.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WIOI01
Assembly method:
DeNovo Magic v. 3.0
Expected final version:
yes
Genome coverage:
180.0x
Sequencing technology:
Illumina HiSeq

IDs: 9182031 [UID] 24715218 [GenBank]

See Genome Information for Mangifera indica

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length374,838,795
Total ungapped length368,309,797
Gaps between scaffolds0
Number of scaffolds2,565
Scaffold N5016,178,320
Scaffold L5010
Number of contigs17,187
Contig N5041,123
Contig L502,480
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)2,565

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_016746435.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028620.1n/an/a0
Chromosome 2CM028621.1n/an/a0
Chromosome 3CM028622.1n/an/a0
Chromosome 4CM028623.1n/an/a0
Chromosome 5CM028624.1n/an/a0
Chromosome 6CM028625.1n/an/a0
Chromosome 7CM028626.1n/an/a0
Chromosome 8CM028627.1n/an/a0
Chromosome 9CM028628.1n/an/a0
Chromosome 10CM028629.1n/an/a0
Chromosome 11CM028630.1n/an/a0
Chromosome 12CM028631.1n/an/a0
Chromosome 13CM028632.1n/an/a0
Chromosome 14CM028633.1n/an/a0
Chromosome 15CM028634.1n/an/a0
Chromosome 16CM028635.1n/an/a0
Chromosome 17CM028636.1n/an/a0
Chromosome 18CM028637.1n/an/a0
Chromosome 19CM028638.1n/an/a0
Chromosome 20CM028639.1n/an/a0
unplacedn/an/an/a2,545

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All374,838,7952,565368,309,79716,178,32014,6220
Chromosome 117,320,008116,987,01817,320,0087640
Chromosome 217,063,873116,651,21017,063,8738770
Chromosome 321,566,805121,120,73721,566,8059770
Chromosome 422,357,487121,952,81822,357,4879420
Chromosome 514,540,018114,237,30714,540,0187050
Chromosome 610,680,009110,477,65610,680,0094970
Chromosome 713,133,232112,859,29413,133,2326020
Chromosome 814,750,018114,454,68014,750,0186530
Chromosome 921,055,410120,612,90821,055,4109590
Chromosome 1011,063,414110,847,51011,063,4144770
Chromosome 1117,675,019117,397,31117,675,0197000
Chromosome 1214,336,529114,048,56814,336,5296570
Chromosome 1315,099,493114,782,76915,099,4937180
Chromosome 1413,335,999113,040,46713,335,9996290
Chromosome 1516,178,320115,903,57416,178,3205980
Chromosome 1621,434,198120,986,20521,434,1989150
Chromosome 1711,746,059111,536,41211,746,0595030
Chromosome 1816,863,820116,539,20116,863,8207620
Chromosome 1922,398,858121,950,70322,398,8589890
Chromosome 2016,105,987115,789,21016,105,9876980
unplaced46,134,2392,54546,134,23949,06200