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ASM1670456v1

Organism name:
Candidatus Phosphoribacter baldrii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
AalW_18-Q3-R10-53_BAT3C.524
BioSample:
SAMN16425541
BioProject:
PRJNA629478
Submitter:
Aalborg University
Date:
2021/01/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_016704565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JADIZV01
Assembly method:
CANU v. 1.8
Expected final version:
yes
Genome coverage:
58.049706x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 9159661 [UID] 24653988 [GenBank]

See Genome Information for Candidatus Phosphoribacter baldrii

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/05/2020 09:22:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,331
CDSs (total)::3,280
Genes (coding)::3,184
CDSs (with protein)::3,184
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::96
CDSs (without protein)::96
Pseudo Genes (ambiguous residues)::0 of 96
Pseudo Genes (frameshifted)::59 of 96
Pseudo Genes (incomplete)::38 of 96
Pseudo Genes (internal stop)::4 of 96
Pseudo Genes (multiple problems)::5 of 96
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,605,160
Total ungapped length3,605,160
Number of contigs5
Contig N50981,233
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,605,16053,605,160981,23300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Phosphoribacter baldriiCandidatus Phosphoribacter baldrii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016707175.1Candidatus Phosphoribacter hodriisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.1550.5846.65

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected