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ASM1670378v1

Organism name:
Betaproteobacteria bacterium (b-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
AalW_18-Q3-R10-53_MAXAC.393
BioSample:
SAMN16425584
BioProject:
PRJNA629478
Submitter:
Aalborg University
Date:
2021/01/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_016703785.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JADJBM01
Assembly method:
CANU v. 1.8
Expected final version:
yes
Genome coverage:
13.788119x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 9159271 [UID] 24653238 [GenBank]

See Genome Information for Betaproteobacteria bacterium

There are 1216 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/05/2020 10:29:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,736
CDSs (total)::3,674
Genes (coding)::3,350
CDSs (with protein)::3,350
Genes (RNA)::62
rRNAs::3, 2, 4 (5S, 16S, 23S)
complete rRNAs::3, 2, 4 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::324
CDSs (without protein)::324
Pseudo Genes (ambiguous residues)::0 of 324
Pseudo Genes (frameshifted)::269 of 324
Pseudo Genes (incomplete)::54 of 324
Pseudo Genes (internal stop)::34 of 324
Pseudo Genes (multiple problems)::31 of 324
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,723,500
Total ungapped length3,723,500
Number of contigs35
Contig N50217,080
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)35

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,723,500353,723,500217,08000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacteriumBetaproteobacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003663955.1Sulfurisoma sediminicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.3511.5114.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-lineage-matchna