U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1618546v1

Organism name:
Candidatus Solibacter usitatus (bacteria)
Taxonomy check:
Inconclusive
Isolate:
NC_groundwater_577_Pr5_B-0.1um_61_10
BioSample:
SAMN15435073
BioProject:
PRJNA640378
Submitter:
Innovative Genomics Institute
Date:
2020/12/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_016185465.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACPNO01
Assembly method:
MEGAHIT v. 1.2.9
Expected final version:
yes
Genome coverage:
61.02x
Sequencing technology:
Illumina NovaSeq

IDs: 8899421 [UID] 24065178 [GenBank]

See Genome Information for Candidatus Solibacter usitatus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/21/2020 03:53:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,286
CDSs (total)::2,271
Genes (coding)::2,231
CDSs (with protein)::2,231
Genes (RNA)::15
tRNAs::13
ncRNAs::2
Pseudo Genes (total)::40
CDSs (without protein)::40
Pseudo Genes (ambiguous residues)::7 of 40
Pseudo Genes (frameshifted)::27 of 40
Pseudo Genes (incomplete)::7 of 40
Pseudo Genes (internal stop)::4 of 40
Pseudo Genes (multiple problems)::5 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,335,330
Total ungapped length2,334,737
Gaps between scaffolds0
Number of scaffolds91
Scaffold N5044,562
Scaffold L5018
Number of contigs104
Contig N5039,575
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,335,330912,334,73744,562130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Solibacter usitatusCandidatus Solibacter usitatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana