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ASM1485188v1

Organism name:
Ensifer sp. ENS02 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ENS02
BioSample:
SAMN15951387
BioProject:
PRJNA660495
Submitter:
University of Chicago
Date:
2020/10/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_014851885.1 (latest)
RefSeq assembly accession:
GCF_014851885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACVAO01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
20.564605x
Sequencing technology:
Illumina MiSeq

IDs: 8226491 [UID] 22461668 [GenBank] 22482708 [RefSeq]

See Genome Information for Ensifer sp. ENS02

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/03/2020 20:36:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,136
CDSs (total)::7,067
Genes (coding)::6,915
CDSs (with protein)::6,915
Genes (RNA)::69
rRNAs::4, 1, 4 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 3 (5S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::152
CDSs (without protein)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::80 of 152
Pseudo Genes (incomplete)::82 of 152
Pseudo Genes (internal stop)::15 of 152
Pseudo Genes (multiple problems)::24 of 152
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,496,881
Total ungapped length7,496,881
Number of contigs113
Contig N50410,540
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)113

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,496,8811137,496,881410,54000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ensifer sp. ENS02Ensifer sp. ENS02

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000697965.2Ensifer adhaerenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.8088.7091.50

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna