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ASM1346749v1

Organism name:
Gossypium gossypioides (eudicots)
Isolate:
5
BioSample:
SAMN10346761
BioProject:
PRJNA488266
Submitter:
Mississippi State University
Date:
2020/09/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_013467495.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JABEZY01
Assembly method:
AbySS v. 2.0.1; Chromosomer v. August 2017
Expected final version:
yes
Reference guided assembly:
GCA_000327365.1
Genome coverage:
59.15x
Sequencing technology:
Illumina HiSeq 2500

IDs: 8031151 [UID] 21982638 [GenBank]

See Genome Information for Gossypium gossypioides

History (Show revision history)

Comment

Global statistics

Total sequence length664,724,314
Total ungapped length640,396,013
Gaps between scaffolds0
Number of scaffolds344,899
Scaffold N5032,963,687
Scaffold L5010
Number of contigs590,898
Contig N503,979
Contig L5041,251
Total number of chromosomes and plasmids13
Number of component sequences (WGS or clone)344,899

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013467575.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM025141.1n/an/a0
Chromosome 2CM025142.1n/an/a0
Chromosome 3CM025143.1n/an/a0
Chromosome 4CM025144.1n/an/a0
Chromosome 5CM025145.1n/an/a0
Chromosome 6CM025146.1n/an/a0
Chromosome 7CM025147.1n/an/a0
Chromosome 8CM025148.1n/an/a0
Chromosome 9CM025149.1n/an/a0
Chromosome 10CM025150.1n/an/a0
Chromosome 11CM025151.1n/an/a0
Chromosome 12CM025152.1n/an/a0
Chromosome 13CM025153.1n/an/a0
unplacedn/an/an/a344,886

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All664,724,314344,899640,396,01332,963,687245,9990
Chromosome 132,963,687130,682,22432,963,68717,6520
Chromosome 236,218,675134,353,35736,218,67519,1610
Chromosome 325,688,411124,281,89225,688,41114,4570
Chromosome 436,552,845134,696,73836,552,84519,1330
Chromosome 537,612,318135,740,81137,612,31819,2170
Chromosome 630,300,518128,699,38930,300,51816,4880
Chromosome 737,663,845135,453,78137,663,84522,6920
Chromosome 833,532,606131,852,73133,532,60617,3420
Chromosome 942,779,063140,362,71942,779,06324,8610
Chromosome 1035,857,475134,108,29535,857,47518,0020
Chromosome 1136,072,617134,035,28636,072,61720,8970
Chromosome 1221,800,887120,676,33221,800,88711,5750
Chromosome 1333,123,602131,304,03533,123,60218,5360
unplaced224,557,765344,886224,148,4231,3405,9860