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ASM1337539v1

Organism name:
Desulfobacterales bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CR_Bin_276
BioSample:
SAMN14414636
BioProject:
PRJNA599172
Submitter:
University of Delaware
Date:
2020/06/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_013375395.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JABXJW01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
yes
Genome coverage:
37x
Sequencing technology:
Illumina NextSeq

IDs: 7301861 [UID] 20173648 [GenBank]

See Genome Information for Desulfobacterales bacterium

There are 430 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/22/2020 14:30:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,241
CDSs (total)::4,193
Genes (coding)::4,141
CDSs (with protein)::4,141
Genes (RNA)::48
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::42
ncRNAs::5
Pseudo Genes (total)::52
CDSs (without protein)::52
Pseudo Genes (ambiguous residues)::5 of 52
Pseudo Genes (frameshifted)::17 of 52
Pseudo Genes (incomplete)::29 of 52
Pseudo Genes (internal stop)::2 of 52
Pseudo Genes (multiple problems)::1 of 52
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,250,248
Total ungapped length4,250,038
Gaps between scaffolds0
Number of scaffolds591
Scaffold N5013,703
Scaffold L5089
Number of contigs603
Contig N5012,979
Contig L5091
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)591

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,250,2485914,250,03813,703120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfobacterales bacteriumDesulfobacterales bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000350545.1Desulfotignum phosphitoxidanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.090.020.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena