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ASM1334872v1

Organism name:
Ectothiorhodospiraceae bacterium 2226 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 2226
BioSample:
SAMN14839784
BioProject:
PRJNA494838
Submitter:
Chinese academy of science
Date:
2020/06/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_013348725.1 (latest)
RefSeq assembly accession:
GCF_013348725.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.7.11
Expected final version:
yes
Genome coverage:
1192.33x
Sequencing technology:
Oxford Nanopore GridION

IDs: 7283161 [UID] 20084638 [GenBank] 20099358 [RefSeq]

See Genome Information for Ectothiorhodospiraceae bacterium 2226

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/11/2020 12:35:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,865
CDSs (total)::2,806
Genes (coding)::2,770
CDSs (with protein)::2,770
Genes (RNA)::58
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::17 of 36
Pseudo Genes (incomplete)::17 of 36
Pseudo Genes (internal stop)::4 of 36
Pseudo Genes (multiple problems)::2 of 36
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,956,257
Total ungapped length2,956,257
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013348735.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP054689.1=NZ_CP054689.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,956,257

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ectothiorhodospiraceae bacterium 2226Ectothiorhodospiraceae bacterium 2226

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003337735.1Thioalbus denitrificanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.264.903.49

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena