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ASM1057779v1

Organism name:
Isatis tinctoria (woad)
Isolate:
I672
BioSample:
SAMN12097857
BioProject:
PRJNA549758
Submitter:
Isatis indigotica
Date:
2020/02/14
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_010577795.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VHIU01
Assembly method:
Canu v. 1.6; wtdbg v. 1; Quickmerge v. 0.2
Expected final version:
yes
Genome coverage:
142.71x
Sequencing technology:
PacBio Sequel

IDs: 5805581 [UID] 16728648 [GenBank]

See Genome Information for Isatis tinctoria

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length293,865,481
Total ungapped length293,826,581
Gaps between scaffolds0
Number of scaffolds809
Scaffold N5036,165,591
Scaffold L504
Number of contigs1,198
Contig N501,176,212
Contig L5056
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)809

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_010577905.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM021244.1n/an/a0
Chromosome 2CM021245.1n/an/a0
Chromosome 3CM021246.1n/an/a0
Chromosome 4CM021247.1n/an/a0
Chromosome 5CM021248.1n/an/a0
Chromosome 6CM021249.1n/an/a0
Chromosome 7CM021250.1n/an/a0
unplacedn/an/an/a802

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All293,865,481809293,826,58136,165,5913890
Chromosome 137,882,070137,876,77037,882,070530
Chromosome 233,398,267133,394,16733,398,267410
Chromosome 334,449,053134,443,25334,449,053580
Chromosome 433,476,566133,470,06633,476,566650
Chromosome 538,253,781138,246,68138,253,781710
Chromosome 636,165,591136,161,39136,165,591420
Chromosome 737,197,722137,191,82237,197,722590
unplaced43,042,43180243,042,43166,37700