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ASM872657v1

Organism name:
Streptococcus anginosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB3444
BioSample:
SAMN12797026
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2019/09/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008726575.1 (latest)
RefSeq assembly accession:
GCF_008726575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VYVX01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
58.8x
Sequencing technology:
Illumina MiSeq

IDs: 4743771 [UID] 14133068 [GenBank] 14243398 [RefSeq]

See Genome Information for Streptococcus anginosus

There are 350 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/23/2019 19:24:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,989
CDSs (total)::1,936
Genes (coding)::1,775
CDSs (with protein)::1,775
Genes (RNA)::53
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::43
ncRNAs::3
Pseudo Genes (total)::161
CDSs (without protein)::161
Pseudo Genes (ambiguous residues)::0 of 161
Pseudo Genes (frameshifted)::83 of 161
Pseudo Genes (incomplete)::54 of 161
Pseudo Genes (internal stop)::63 of 161
Pseudo Genes (multiple problems)::35 of 161
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,923,186
Total ungapped length1,923,186
Number of contigs42
Contig N50116,821
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,923,186421,923,186116,82100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus anginosusStreptococcus anginosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000373605.1Streptococcus anginosus SK52 = DSM 20563type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000373605.1Streptococcus anginosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.3679.9579.43
Best-match type95.3679.9579.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna