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ASM806511v1

Organism name:
Bythopirellula goksoeyrii (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Pr1d
BioSample:
SAMN10980023
BioProject:
PRJNA485700
Submitter:
Radboud Universiteit Nijmegen
Date:
2019/08/22
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_008065115.1 (latest)
RefSeq assembly accession:
GCF_008065115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.7.0 & Velvet v. 1.2.10
Genome coverage:
224x
Sequencing technology:
Illumina MiSeq

IDs: 4389431 [UID] 13314458 [GenBank] 13358338 [RefSeq]

See Genome Information for Bythopirellula goksoeyrii

History (Show revision history)

Comment

Bacteria and source DNA available from Lise.Ovreas@uib.no
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/08/2023 02:53:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,107
CDSs (total)::5,031
Genes (coding)::5,007
CDSs (with protein)::5,007
Genes (RNA)::76
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::24
CDSs (without protein)::24
Pseudo Genes (ambiguous residues)::0 of 24
Pseudo Genes (frameshifted)::3 of 24
Pseudo Genes (incomplete)::18 of 24
Pseudo Genes (internal stop)::7 of 24
Pseudo Genes (multiple problems)::3 of 24
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,473,141
Total ungapped length6,469,164
Gaps between scaffolds0
Number of scaffolds1
Scaffold N506,473,141
Scaffold L501
Number of contigs8
Contig N502,091,864
Contig L502
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008065125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP042913.1=NZ_CP042913.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 6,473,14116,469,1646,473,14170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bythopirellula goksoeyriiBythopirellula goksoeyrii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007860015.1Bythopirellula polymerisociatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.2810.7611.33

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected