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ASM606531v1

Organism name:
Aureibaculum algae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 10Alg 115
BioSample:
SAMN11835398
BioProject:
PRJNA544404
Submitter:
Korea Research Institute of Bioscience & Biotechnology (KRIBB)
Date:
2019/06/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006065315.1 (latest)
RefSeq assembly accession:
GCF_006065315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
5.0x
Sequencing technology:
PacBio RSII

IDs: 3305851 [UID] 10929428 [GenBank] 11020598 [RefSeq]

See Genome Information for Aureibaculum algae

History (Show revision history)

Comment

Bacteria and source DNA available from Korea Research Institution of Bioscience and Biotechnology
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/22/2023 02:24:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,393
CDSs (total)::4,345
Genes (coding)::4,325
CDSs (with protein)::4,325
Genes (RNA)::48
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::38
ncRNAs::4
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::5 of 20
Pseudo Genes (incomplete)::9 of 20
Pseudo Genes (internal stop)::9 of 20
Pseudo Genes (multiple problems)::3 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,168,958
Total ungapped length5,168,958
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_006065325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP040749.1=NZ_CP040749.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,168,958

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aureibaculum algaeAureibaculum algae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003449015.1Aureibaculum luteumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.9076.9777.88

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected