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Source database (GenBank or RefSeq) File type

ASM588555v1

Organism name:

Actinomycetota bacterium (actinobacteria)

Taxonomy check:

Inconclusive

Isolate:

AC_7

BioSample:

SAMN11380189

BioProject:

PRJNA449266

Submitter:

Jill Banfield's Lab at Berkeley

Date:

2019/05/29

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_005885555.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

VAWN01

Assembly method:

IDBA_UD v. 1.1.1

Expected final version:

yes

Genome coverage:

Sequencing technology:

Illumina HiSeq

IDs: 3216231 [UID] 10738148 [GenBank]

See Genome Information for Actinomycetota bacterium

Pathogen Detection Resources

There are 3886 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005885555.1	n/a	n/a	ASM588555v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/15/2019 15:33:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,189
CDSs (total)::6,146
Genes (coding)::5,774
CDSs (with protein)::5,774
Genes (RNA)::43
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::372
CDSs (without protein)::372
Pseudo Genes (ambiguous residues)::50 of 372
Pseudo Genes (frameshifted)::184 of 372
Pseudo Genes (incomplete)::178 of 372
Pseudo Genes (internal stop)::23 of 372
Pseudo Genes (multiple problems)::60 of 372
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,699,801
Total ungapped length	6,690,561
Gaps between scaffolds	0
Number of scaffolds	197
Scaffold N50	103,268
Scaffold L50	22
Number of contigs	331
Contig N50	56,002
Contig L50	32
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	197

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	82.81	12.02	7.23

Assembly

Genome Assembly

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Download Assembly

ASM588555v1

See Genome Information for Actinomycetota bacterium

Pathogen Detection Resources

There are 3886 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

Related Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result