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Source database (GenBank or RefSeq) File type

ASM549170v1

Organism name:: Pontibacter sp. SGAir0037 (CFB group bacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: SGAir0037
BioSample:: SAMN08222698
BioProject:: PRJNA388547
Submitter:: Nanyang Technological University
Date:: 2019/05/17
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_005491705.1 (latest)
RefSeq assembly accession:: GCF_005491705.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3
Expected final version:: yes
Genome coverage:: 197.6x (PacBio); 87.58x (Illumina Miseq)x
Sequencing technology:: PacBio; Illumina MiSeq

IDs: 2925201 [UID] 10108628 [GenBank] 10202358 [RefSeq]

See Genome Information for Pontibacter sp. SGAir0037

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005491705.1	=	GCF_005491705.1	ASM549170v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::08/13/2023 04:55:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,511
CDSs (total)::4,446
Genes (coding)::4,414
CDSs (with protein)::4,414
Genes (RNA)::65
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::32
CDSs (without protein)::32
Pseudo Genes (ambiguous residues)::0 of 32
Pseudo Genes (frameshifted)::7 of 32
Pseudo Genes (incomplete)::23 of 32
Pseudo Genes (internal stop)::4 of 32
Pseudo Genes (multiple problems)::2 of 32
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,383,526
Total ungapped length	5,383,426
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	5,256,878
Scaffold L50	1
Number of contigs	2
Contig N50	5,256,878
Contig L50	1
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP028092.1	=	NZ_CP028092.1
Plasmid pSGAir0037_2	CP028093.1	=	NZ_CP028093.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	5,383,526	2	5,383,426	5,256,878	1
Chromosome	5,256,878	1	5,256,878	5,256,878	0
Plasmid pSGAir0037_2	126,648	1	126,548	126,648	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.72	4.05	4.48

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ASM549170v1

See Genome Information for Pontibacter sp. SGAir0037

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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