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FoenVul1.0

Organism name:
Anethum foeniculum (fennel)
Infraspecific name:
Cultivar: OL2
BioSample:
SAMN07983892
BioProject:
PRJNA419638
Submitter:
University of Padua
Date:
2018/11/13
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003724115.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PHNY01
Assembly method:
nuclear: SOAPdenovo v. Jan-2017; mito: CLC Genomics Workbench v. 11.0.1
Expected final version:
no
Genome coverage:
nuclear: 53.0x; mito: 700.0x
Sequencing technology:
nuclear: Illumina HiSeq; mito: Illumina

IDs: 2071881 [UID] 7786428 [GenBank]

See Genome Information for Anethum foeniculum

History (Show revision history)

Comment

Additional contigs PHNY01300378-PHNY01300977 representing the mitochondrial sequence were added in September 2021. The nuclear assembly date was JAN-2017 while the mitochondrial assembly date was 15-FEB-2020.

Global statistics

Total sequence length1,011,385,054
Total ungapped length968,548,666
Gaps between scaffolds0
Number of scaffolds300,977
Scaffold N509,438
Scaffold L5026,221
Number of contigs1,204,909
Contig N501,888
Contig L5091,350
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)300,977

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,010,971,190300,377968,138,1959,442903,9070