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ASM364588v1

Organism name:
Candidatus Latescibacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
B68_G9
BioSample:
SAMN09215250
BioProject:
PRJNA362212
Submitter:
The University of Texas at Austin
Date:
2018/10/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003645885.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QNCW01
Assembly method:
megahit v. 1.0.6
Expected final version:
yes
Genome coverage:
52.3428571428571x
Sequencing technology:
Illumina HiSeq

IDs: 2016811 [UID] 7573328 [GenBank]

See Genome Information for Candidatus Latescibacterota bacterium

There are 200 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/30/2018 18:27:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,940
CDS (total)::1,906
Genes (coding)::1,888
CDS (coding)::1,888
Genes (RNA)::34
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::4 of 18
Pseudo Genes (incomplete)::15 of 18
Pseudo Genes (internal stop)::1 of 18
Pseudo Genes (multiple problems)::2 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,916,702
Total ungapped length1,916,702
Number of contigs175
Contig N5011,969
Contig L5053
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)175

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,916,7021751,916,70211,96900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Latescibacterota bacteriumCandidatus Latescibacterota bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana