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ASM324839v1

Organism name:
Citromicrobium sp. (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
S2_018_000_R3_115
BioSample:
SAMN07426615
BioProject:
PRJNA376580
Submitter:
None
Date:
2018/06/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_003248395.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QFNA01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
yes
Genome coverage:
000.0
Sequencing technology:
Illumina HiSeq

IDs: 1763991 [UID] 6681438 [GenBank]

See Genome Information for Citromicrobium sp.

There are 13 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/14/2018 12:17:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,855
CDS (total)::2,801
Genes (coding)::2,631
CDS (coding)::2,631
Genes (RNA)::54
rRNAs::1, 2, 3 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::2, 3 (16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::170
Pseudo Genes (ambiguous residues)::0 of 170
Pseudo Genes (frameshifted)::114 of 170
Pseudo Genes (incomplete)::56 of 170
Pseudo Genes (internal stop)::9 of 170
Pseudo Genes (multiple problems)::9 of 170
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,766,224
Total ungapped length2,766,224
Number of contigs206
Contig N5024,199
Contig L5038
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)206

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,766,2242062,766,22424,19900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citromicrobium sp.Citromicrobium sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009827295.1Qipengyuania pelagitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.7314.3713.11

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna