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20120700_P3D

Organism name:
Candidatus Levyibacteriota bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
palsa_1332
BioSample:
SAMN08179849
BioProject:
PRJNA386568
Submitter:
Australian Centre for Ecogenomics, The University of Queensland
Date:
2018/05/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003152105.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PLZJ01
Assembly method:
CLC Genomics Workbench v. 4.4
Expected final version:
yes
Genome coverage:
51.13884212x
Sequencing technology:
Illumina HiSeq2000

IDs: 1718321 [UID] 6542568 [GenBank]

See Genome Information for Candidatus Levyibacteriota bacterium

Pathogen Detection Resources

There are 110 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,215,035
Total ungapped length1,215,018
Gaps between scaffolds0
Number of scaffolds4
Scaffold N50917,863
Scaffold L501
Number of contigs5
Contig N50838,454
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,215,03541,215,018917,86310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Levyibacteriota bacteriumCandidatus Levyibacteriota bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana