Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM288489v1

Organism name:: Fusobacterium nucleatum (fusobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: UMB0249
BioSample:: SAMN07511405
BioProject:: PRJNA316969
Submitter:: Loyola University Chicago
Date:: 2018/01/10
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002884895.1 (latest)
RefSeq assembly accession:: GCF_002884895.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PNHC01
Assembly method:: Velvet v. 1.2
Expected final version:: yes
Genome coverage:: 536.32x
Sequencing technology:: Illumina HiSeq

IDs: 1525401 [UID] 5890678 [GenBank] 15735408 [RefSeq]

See Genome Information for Fusobacterium nucleatum

Pathogen Detection Resources

There are 169 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002884895.1	=	GCF_002884895.1	ASM288489v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria available from Alan J Wolfe, Loyola University Chicago.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::01/05/2018 13:38:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,423
CDS (total)::2,358
Genes (coding)::2,224
CDS (coding)::2,224
Genes (RNA)::65
rRNAs::5, 6, 5 (5S, 16S, 23S)
complete rRNAs::5, 1 (5S, 16S)
partial rRNAs::5, 5 (16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::134
Pseudo Genes (ambiguous residues)::2 of 134
Pseudo Genes (frameshifted)::64 of 134
Pseudo Genes (incomplete)::65 of 134
Pseudo Genes (internal stop)::29 of 134
Pseudo Genes (multiple problems)::26 of 134
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,455,598
Total ungapped length	2,455,411
Gaps between scaffolds	0
Number of scaffolds	27
Scaffold N50	294,517
Scaffold L50	4
Number of contigs	30
Contig N50	272,160
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	27

	ANI	Query coverage	Subject coverage
Declared type	91.77	69.95	78.78
Best-match type	96.63	74.91	81.04

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM288489v1

See Genome Information for Fusobacterium nucleatum

Pathogen Detection Resources

There are 169 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result