Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM287159v1

Organism name:: Lactobacillus iners (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: UMB0033
BioSample:: SAMN07511419
BioProject:: PRJNA316969
Submitter:: Loyola University Chicago
Date:: 2018/01/10
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002871595.1 (latest)
RefSeq assembly accession:: GCF_002871595.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PNGP01
Assembly method:: Velvet v. 1.2
Expected final version:: yes
Genome coverage:: 260.47x
Sequencing technology:: Illumina HiSeq

IDs: 1515721 [UID] 5852438 [GenBank] 5884788 [RefSeq]

See Genome Information for Lactobacillus iners

Pathogen Detection Resources

There are 386 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002871595.1	=	GCF_002871595.1	ASM287159v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria available from Alan J Wolfe, Loyola University Chicago.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::01/05/2018 11:50:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,384
CDS (total)::1,324
Genes (coding)::1,268
CDS (coding)::1,268
Genes (RNA)::60
rRNAs::4, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 1 (5S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::23 of 56
Pseudo Genes (incomplete)::31 of 56
Pseudo Genes (internal stop)::21 of 56
Pseudo Genes (multiple problems)::17 of 56
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,409,948
Total ungapped length	1,408,223
Gaps between scaffolds	0
Number of scaffolds	13
Scaffold N50	728,703
Scaffold L50	1
Number of contigs	19
Contig N50	170,688
Contig L50	3
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	13

	ANI	Query coverage	Subject coverage
Declared type	98.74	83.56	92.71
Best-match type	98.74	83.56	92.71

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM287159v1

See Genome Information for Lactobacillus iners

Pathogen Detection Resources

There are 386 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result