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ASM287149v1

Organism name:
Streptococcus sp. UMB0029 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB0029
BioSample:
SAMN07511435
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2018/01/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002871495.1 (latest)
RefSeq assembly accession:
GCF_002871495.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PNGD01
Assembly method:
Velvet v. 1.2
Expected final version:
yes
Genome coverage:
150.87x
Sequencing technology:
Illumina HiSeq

IDs: 1515671 [UID] 5852338 [GenBank] 5884708 [RefSeq]

See Genome Information for Streptococcus sp. UMB0029

History (Show revision history)

Comment

Bacteria available from Alan J Wolfe, Loyola University Chicago.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/05/2018 12:14:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,306
CDS (total)::2,244
Genes (coding)::2,095
CDS (coding)::2,095
Genes (RNA)::62
rRNAs::3, 1, 4 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (23S)
tRNAs::51
ncRNAs::3
Pseudo Genes (total)::149
Pseudo Genes (ambiguous residues)::3 of 149
Pseudo Genes (frameshifted)::52 of 149
Pseudo Genes (incomplete)::85 of 149
Pseudo Genes (internal stop)::39 of 149
Pseudo Genes (multiple problems)::26 of 149
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,270,705
Total ungapped length2,264,584
Gaps between scaffolds0
Number of scaffolds41
Scaffold N50137,514
Scaffold L507
Number of contigs63
Contig N5071,894
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,270,705412,264,584137,514220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sp. UMB0029Streptococcus sp. UMB0029

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_948472335.1Streptococcus bouchesdurhonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3971.8443.20

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna