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ASM286192v1

Organism name:
Gardnerella vaginalis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB0775
BioSample:
SAMN08193678
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2017/12/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002861925.1 (latest)
RefSeq assembly accession:
GCF_002861925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKJG01
Assembly method:
Velvet v. 1.2
Expected final version:
yes
Genome coverage:
431.98x
Sequencing technology:
Illumina HiSeq

IDs: 1510681 [UID] 5840898 [GenBank] 5861498 [RefSeq]

See Genome Information for Gardnerella vaginalis

There are 210 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Alan J Wolfe.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/22/2017 14:00:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,516
CDS (total)::1,463
Genes (coding)::1,397
CDS (coding)::1,397
Genes (RNA)::53
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::66
Pseudo Genes (ambiguous residues)::0 of 66
Pseudo Genes (frameshifted)::35 of 66
Pseudo Genes (incomplete)::23 of 66
Pseudo Genes (internal stop)::17 of 66
Pseudo Genes (multiple problems)::9 of 66
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,743,554
Total ungapped length1,743,554
Number of contigs9
Contig N501,106,359
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,743,55491,743,5541,106,35900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gardnerella vaginalisGardnerella vaginalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003397685.1Gardnerella vaginalis ATCC 14018 = JCM 11026type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003397685.1Gardnerella vaginalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2787.8292.13
Best-match type98.2787.8292.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna