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ASM286136v1

Organism name:
Corynebacterium coyleae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB0147
BioSample:
SAMN08193655
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2017/12/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002861365.1 (latest)
RefSeq assembly accession:
GCF_002861365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKHQ01
Assembly method:
Velvet v. 1.2
Expected final version:
yes
Genome coverage:
285.05x
Sequencing technology:
Illumina HiSeq

IDs: 1510371 [UID] 5840278 [GenBank] 5857518 [RefSeq]

See Genome Information for Corynebacterium coyleae

There are 15 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Alan J Wolfe.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/22/2017 13:08:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,343
CDS (total)::2,274
Genes (coding)::2,211
CDS (coding)::2,211
Genes (RNA)::69
rRNAs::4, 4, 7 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::3, 7 (16S, 23S)
tRNAs::51
ncRNAs::3
Pseudo Genes (total)::63
Pseudo Genes (ambiguous residues)::0 of 63
Pseudo Genes (frameshifted)::25 of 63
Pseudo Genes (incomplete)::41 of 63
Pseudo Genes (internal stop)::6 of 63
Pseudo Genes (multiple problems)::9 of 63
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,436,985
Total ungapped length2,436,744
Gaps between scaffolds0
Number of scaffolds41
Scaffold N50215,829
Scaffold L504
Number of contigs44
Contig N50215,829
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,436,985412,436,744215,82930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium coyleaeCorynebacterium coyleae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019048165.1Corynebacterium coyleaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019048165.1Corynebacterium coyleaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.4091.6388.95
Best-match type97.4091.6388.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna